Roza Otunbayeva told Kommersant many deaths in the countryside were not part of the official total of yet, which the Kyrgyz news agency Kabar places at 191, according to the Kyrgyz Health Care Ministry.
In a separate interview in Osh, the iterim president called for reconciliation between the Kyrgyz and Uzbeks.
"By all means, we have to give hope that we shall restore the city, return all the refugees and create all conditions for that. I think the entire world will be helping us, because we two peoples have the goodwill to live in peace and friendship together," said Otunbayeva.
A U.S. official on Friday called for a "substantial" investigation into the killings. Assistant Secretary of State Robert Blake was at a refugee camp near the border in Uzbekistan, where thousands of ethnic Uzbeks fled violence in neighboring Kyrgyzstan.
Blake said he wants Kyrgyzstan authorities to investigate who carried out the attacks on ethnic Uzbeks and to bring those responsible to justice. He planned to go to the Kyrgyz capital of Bishkek later Friday to deliver the message personally, he said.
Blake praised the Uzbek government for working to support the refugees who have flooded into their country. About 120,000 have crossed the border into Uzbekistan, far more than officials had been expecting.
The Obama administration is committed to assisting the Uzbek government with supplies and other aid, Blake said at the camp near Yor Kishlok, where refugees were living in rows of tents.
Refugees were telling stories about the violence that began last week, describing houses and businesses burned by rampaging militias, bodies in the streets and how their relatives had been killed.
Video and witness accounts were starting to emerge Friday that units of the Kyrgyz military may have been taking part in the violence. Refugees on both sides of the border said they are frightened of the Kyrgyz military.
Ethnic violence has displaced about 300,000 people inside Kyrgyzstan, The Office of the U.N. High Commissioner for Refugees said Thursday, citing information from the Kyrgyz interim government and nongovernmental organizations.
Some relief for those refugees is imminent. The UN refugee agency said Friday it will begin airlifting supplies into Kyrgyzstan this weekend. UNHCR plans to send two cargo planes to the southern Kyrgyz city of Osh with enough assistance to help about 15,000 people, with one arriving Saturday and the other Sunday.
Families and host communities were sheltering many of them, but at least 40,000 people were in need of shelter, according to the UNHCR.
The violence between Kyrgyz and Uzbeks in southern Kyrgyzstan has calmed down after it erupted late last week. The UNHCR said in addition to the dozens of deaths around 1,900 have been wounded.
The agency said the situation in Osh and nearby villages "appears to be volatile" and conditions in Jalal-Abad are tense. Many families have left Osh and Jalal-Abad for Bishkek and other areas.
The flood of refugees into Uzbekistan has strained the country's health care and food sectors, and several dozen female refugees crossed the border pregnant and have given birth, the United Nations said.
China, which borders Kyrgyzstan on the east, said Thursday it had removed 1,299 Chinese nationals, the state-run news agency Xinhua said.
The clashes in Kyrgyzstan, which started last week, were part of the most serious outbreak of ethnic violence in the former Soviet republic since 1990, when hundreds of people died in skirmishes between Uzbeks and Kyrgyz in Osh.
The United Nations and several countries, including the United States, Germany and Russia, have sent aid to the region. Francois Blancy, deputy head of the Red Cross regional office in Uzbekistan, said more aid is needed.
"We are now at the peak of the humanitarian crisis," Blancy said Thursday.